PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004028.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 25957.6 Da    PI: 8.7072
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004028.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.71.8e-241059251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 +i+n + rqvtf kRr g++KKAeEL vLCda+va+i+fsstgk + ++s
  Aco004028.1 10 KIDNATARQVTFLKRRRGLFKKAEELAVLCDADVALIVFSSTGKHFQFAS 59
                 69******************************************999975 PP

2K-box53.11.4e-1881170998
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.651161IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-36160IPR002100Transcription factor, MADS-box
CDDcd002651.28E-36277No hitNo description
PRINTSPR004041.1E-24323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-29374IPR002100Transcription factor, MADS-box
PfamPF003193.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.38886179IPR002487Transcription factor, K-box
PfamPF014861.7E-1689170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAREKIQIRK IDNATARQVT FLKRRRGLFK KAEELAVLCD ADVALIVFSS TGKHFQFASS  60
SMNQIIEKHS LHSKNLQKAE QPSIDLNVEQ NTYTRLSKEI AEASLQLRQM RGEELHKLTI  120
HELQQLEKTL EIGLGRVLER KSEQIMEEIS SLKQKSAALM EKNTQLKEQV VKIAKTGRKQ  180
MVNDSEHVLH EDGQSSESIT NASLSGAPPD YCDDSSDTSL RLGLAISSWK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-19173173Myocyte-specific enhancer factor 2B
1tqe_Q2e-19173173Myocyte-specific enhancer factor 2B
1tqe_R2e-19173173Myocyte-specific enhancer factor 2B
1tqe_S2e-19173173Myocyte-specific enhancer factor 2B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6609557e-71KM660955.1 Ananas bracteatus clone 40252 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926365.11e-114PREDICTED: MADS-box protein JOINTLESS-like
RefseqXP_010926366.11e-114PREDICTED: MADS-box protein JOINTLESS-like
SwissprotQ9FUY62e-92JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLQ2NNB91e-113Q2NNB9_ELAGV; MADS box transcription factor
STRINGGSMUA_Achr3P06800_0011e-100(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-90MIKC_MADS family protein